Authentic Research Experience and “Big Data” Analysis in the Classroom: Maize Response to Abiotic Stress
Identifieur interne : 000143 ( Main/Exploration ); précédent : 000142; suivant : 000144Authentic Research Experience and “Big Data” Analysis in the Classroom: Maize Response to Abiotic Stress
Auteurs : Irina Makarevitch ; Cameo Frechette ; Natalia WiatrosSource :
- CBE Life Sciences Education [ 1931-7913 ] ; 2015.
Abstract
This article describes the design, implementation, and assessment of a novel laboratory series aimed at providing students with authentic research experience in analyzing large data sets, specifically in RNA-seq analysis.
Url:
DOI: 10.1187/cbe.15-04-0081
PubMed: 26163561
PubMed Central: 4710385
Affiliations:
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uniqKey="Stapleton A">AE Stapleton</name></author><author><name sortKey="Gessler, D" uniqKey="Gessler D">D Gessler</name></author><author><name sortKey="Matasci, N" uniqKey="Matasci N">N Matasci</name></author><author><name sortKey="Wang, L" uniqKey="Wang L">L Wang</name></author><author><name sortKey="Hanlon, M" uniqKey="Hanlon M">M Hanlon</name></author><author><name sortKey="Lenards, A" uniqKey="Lenards A">A Lenards</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Guilford" uniqKey="Guilford">Guilford</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hake, Rr" uniqKey="Hake R">RR Hake</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hanauer, Di" uniqKey="Hanauer D">DI Hanauer</name></author><author><name sortKey="Jacobs Sera, D" uniqKey="Jacobs Sera D">D Jacobs-Sera</name></author><author><name sortKey="Pedulla, Ml" uniqKey="Pedulla M">ML Pedulla</name></author><author><name 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Nagy</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Laursen, S" uniqKey="Laursen S">S Laursen</name></author><author><name sortKey="Hunter, Ab" uniqKey="Hunter A">AB Hunter</name></author><author><name sortKey="Seymour, E" uniqKey="Seymour E">E Seymour</name></author><author><name sortKey="Thiry, H" uniqKey="Thiry H">H Thiry</name></author><author><name sortKey="Melton, G" uniqKey="Melton G">G Melton</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Lopatto, D" uniqKey="Lopatto D">D Lopatto</name></author><author><name sortKey="Alvarez, C" uniqKey="Alvarez C">C Alvarez</name></author><author><name sortKey="Barnard, D" uniqKey="Barnard D">D Barnard</name></author><author><name sortKey="Chandrasekaran, C" uniqKey="Chandrasekaran C">C Chandrasekaran</name></author><author><name sortKey="Chung, Hm" uniqKey="Chung H">HM Chung</name></author><author><name sortKey="Du, C" uniqKey="Du C">C Du</name></author><author><name sortKey="Eckdahl, T" uniqKey="Eckdahl T">T Eckdahl</name></author><author><name sortKey="Goodman, Al" uniqKey="Goodman A">AL Goodman</name></author><author><name sortKey="Hauser, C" uniqKey="Hauser C">C Hauser</name></author><author><name sortKey="Jones, Cj" uniqKey="Jones C">CJ Jones</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Lopatto, D" uniqKey="Lopatto D">D Lopatto</name></author><author><name sortKey="Hauser, C" uniqKey="Hauser C">C Hauser</name></author><author><name sortKey="Jones, Cj" uniqKey="Jones C">CJ Jones</name></author><author><name sortKey="Paetkau, D" uniqKey="Paetkau D">D Paetkau</name></author><author><name sortKey="Chandrasekaran, V" uniqKey="Chandrasekaran V">V Chandrasekaran</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Magana, Aj" uniqKey="Magana A">AJ Magana</name></author><author><name sortKey="Taleyarkhan, M" uniqKey="Taleyarkhan M">M Taleyarkhan</name></author><author><name sortKey="Alvarado, Dr" uniqKey="Alvarado D">DR Alvarado</name></author><author><name sortKey="Kane, M" uniqKey="Kane M">M Kane</name></author><author><name sortKey="Springer, J" uniqKey="Springer J">J Springer</name></author><author><name sortKey="Clase, K" uniqKey="Clase K">K Clase</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Makarevitch, I" uniqKey="Makarevitch I">I Makarevitch</name></author><author><name sortKey="Waters, Aj" uniqKey="Waters A">AJ Waters</name></author><author><name sortKey="West, Pt" uniqKey="West P">PT West</name></author><author><name sortKey="Stitzer, M" uniqKey="Stitzer M">M Stitzer</name></author><author><name sortKey="Hirsch, Cn" uniqKey="Hirsch C">CN Hirsch</name></author><author><name sortKey="Ross Ibarra, J" uniqKey="Ross Ibarra J">J Ross-Ibarra</name></author><author><name sortKey="Springer, Nm" uniqKey="Springer N">NM Springer</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Matthews, Ke" uniqKey="Matthews K">KE Matthews</name></author><author><name sortKey="Adams, P" uniqKey="Adams P">P Adams</name></author><author><name sortKey="Goos, M" uniqKey="Goos M">M Goos</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Micklos, D" uniqKey="Micklos D">D Micklos</name></author><author><name sortKey="Lauter, S" uniqKey="Lauter S">S Lauter</name></author><author><name sortKey="Nisselle, A" uniqKey="Nisselle A">A Nisselle</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Milton, Jg" uniqKey="Milton J">JG Milton</name></author><author><name sortKey="Radunskaya, Ae" uniqKey="Radunskaya A">AE Radunskaya</name></author><author><name sortKey="Lee, Ah" uniqKey="Lee A">AH Lee</name></author><author><name sortKey="De Pillis, Lg" uniqKey="De Pillis L">LG de Pillis</name></author><author><name sortKey="Bartlett, Df" uniqKey="Bartlett D">DF 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Hannula</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list></list><tree><noCountry><name sortKey="Frechette, Cameo" sort="Frechette, Cameo" uniqKey="Frechette C" first="Cameo" last="Frechette">Cameo Frechette</name><name sortKey="Makarevitch, Irina" sort="Makarevitch, Irina" uniqKey="Makarevitch I" first="Irina" last="Makarevitch">Irina Makarevitch</name><name sortKey="Wiatros, Natalia" sort="Wiatros, Natalia" uniqKey="Wiatros N" first="Natalia" last="Wiatros">Natalia Wiatros</name></noCountry></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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